Oligomer Generator

1.- Pick a capsid from VIPERdb:

OR upload your own PDB

(WARNING: Coordinates must be in the VIPERdb convention)

T-number (for upload only):

2.- Would you like to generate a section of the particle?

3.- Select the SUBUNIT and MATRIX identifiers

Select a chain ID from the pulldown, and enter a series of comma delimited matrix identifiers (1, 2, 3, etc.) or a range of matrix identifiers (1-60).

OR enter a set of specific chain-matrix values.(based on the numbers in the adjacent DIAGRAM e.g. C1,B6,C7,B8,C9,B5 OR simply 1, 2, 3, etc.)

4.- Use only the C-alpha atoms?

Yes No

5.- Is this an oligomer for Modeller?

Yes No